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Jul 8

ST-Raptor: LLM-Powered Semi-Structured Table Question Answering

Semi-structured tables, widely used in real-world applications (e.g., financial reports, medical records, transactional orders), often involve flexible and complex layouts (e.g., hierarchical headers and merged cells). These tables generally rely on human analysts to interpret table layouts and answer relevant natural language questions, which is costly and inefficient. To automate the procedure, existing methods face significant challenges. First, methods like NL2SQL require converting semi-structured tables into structured ones, which often causes substantial information loss. Second, methods like NL2Code and multi-modal LLM QA struggle to understand the complex layouts of semi-structured tables and cannot accurately answer corresponding questions. To this end, we propose ST-Raptor, a tree-based framework for semi-structured table question answering using large language models. First, we introduce the Hierarchical Orthogonal Tree (HO-Tree), a structural model that captures complex semi-structured table layouts, along with an effective algorithm for constructing the tree. Second, we define a set of basic tree operations to guide LLMs in executing common QA tasks. Given a user question, ST-Raptor decomposes it into simpler sub-questions, generates corresponding tree operation pipelines, and conducts operation-table alignment for accurate pipeline execution. Third, we incorporate a two-stage verification mechanism: forward validation checks the correctness of execution steps, while backward validation evaluates answer reliability by reconstructing queries from predicted answers. To benchmark the performance, we present SSTQA, a dataset of 764 questions over 102 real-world semi-structured tables. Experiments show that ST-Raptor outperforms nine baselines by up to 20% in answer accuracy. The code is available at https://github.com/weAIDB/ST-Raptor.

  • 9 authors
·
Aug 25, 2025 2

CHIRP dataset: towards long-term, individual-level, behavioral monitoring of bird populations in the wild

Long-term behavioral monitoring of individual animals is crucial for studying behavioral changes that occur over different time scales, especially for conservation and evolutionary biology. Computer vision methods have proven to benefit biodiversity monitoring, but automated behavior monitoring in wild populations remains challenging. This stems from the lack of datasets that cover a range of computer vision tasks necessary to extract biologically meaningful measurements of individual animals. Here, we introduce such a dataset (CHIRP) with a new method (CORVID) for individual re-identification of wild birds. The CHIRP (Combining beHaviour, Individual Re-identification and Postures) dataset is curated from a long-term population of wild Siberian jays studied in Swedish Lapland, supporting re-identification (re-id), action recognition, 2D keypoint estimation, object detection, and instance segmentation. In addition to traditional task-specific benchmarking, we introduce application-specific benchmarking with biologically relevant metrics (feeding rates, co-occurrence rates) to evaluate the performance of models in real-world use cases. Finally, we present CORVID (COlouR-based Video re-ID), a novel pipeline for individual identification of birds based on the segmentation and classification of colored leg rings, a widespread approach for visual identification of individual birds. CORVID offers a probability-based id tracking method by matching the detected combination of color rings with a database. We use application-specific benchmarking to show that CORVID outperforms state-of-the-art re-id methods. We hope this work offers the community a blueprint for curating real-world datasets from ethically approved biological studies to bridge the gap between computer vision research and biological applications.

  • 9 authors
·
Mar 25

RAPTOR: A Foundation Policy for Quadrotor Control

Humans are remarkably data-efficient when adapting to new unseen conditions, like driving a new car. In contrast, modern robotic control systems, like neural network policies trained using Reinforcement Learning (RL), are highly specialized for single environments. Because of this overfitting, they are known to break down even under small differences like the Simulation-to-Reality (Sim2Real) gap and require system identification and retraining for even minimal changes to the system. In this work, we present RAPTOR, a method for training a highly adaptive foundation policy for quadrotor control. Our method enables training a single, end-to-end neural-network policy to control a wide variety of quadrotors. We test 10 different real quadrotors from 32 g to 2.4 kg that also differ in motor type (brushed vs. brushless), frame type (soft vs. rigid), propeller type (2/3/4-blade), and flight controller (PX4/Betaflight/Crazyflie/M5StampFly). We find that a tiny, three-layer policy with only 2084 parameters is sufficient for zero-shot adaptation to a wide variety of platforms. The adaptation through In-Context Learning is made possible by using a recurrence in the hidden layer. The policy is trained through a novel Meta-Imitation Learning algorithm, where we sample 1000 quadrotors and train a teacher policy for each of them using Reinforcement Learning. Subsequently, the 1000 teachers are distilled into a single, adaptive student policy. We find that within milliseconds, the resulting foundation policy adapts zero-shot to unseen quadrotors. We extensively test the capabilities of the foundation policy under numerous conditions (trajectory tracking, indoor/outdoor, wind disturbance, poking, different propellers).

  • 3 authors
·
Sep 14, 2025 2

Copilot Refinement: Addressing Code Smells in Copilot-Generated Python Code

As one of the most popular dynamic languages, Python experiences a decrease in readability and maintainability when code smells are present. Recent advancements in Large Language Models have sparked growing interest in AI-enabled tools for both code generation and refactoring. GitHub Copilot is one such tool that has gained widespread usage. Copilot Chat, released on September 2023, functions as an interactive tool aims at facilitating natural language-powered coding. However, limited attention has been given to understanding code smells in Copilot-generated Python code and Copilot's ability to fix the code smells it generates. To this end, we built a dataset comprising 102 code smells in Copilot-generated Python code. Our aim is to first explore the occurrence of code smells in Copilot-generated Python code and then evaluate the effectiveness of Copilot in fixing these code smells employing different prompts. The results show that 8 out of 10 types of Python smells can be detected in Copilot-generated Python code, among which Multiply-Nested Container is the most common one. For these code smells, Copilot Chat achieves a highest fixing rate of 87.1%, showing promise in fixing Python code smells generated by Copilot itself. Besides, the effectiveness of Copilot Chat in fixing these smells can be improved with the provision of more detailed prompts. However, using Copilot Chat to fix these smells might introduce new code smells.

  • 5 authors
·
Jan 25, 2024

Adaptive Evidence Weighting for Audio-Spatiotemporal Fusion

Many machine learning systems have access to multiple sources of evidence for the same prediction target, yet these sources often differ in reliability and informativeness across inputs. In bioacoustic classification, species identity may be inferred both from the acoustic signal and from spatiotemporal context such as ___location and season; while Bayesian inference motivates multiplicative evidence combination, in practice we typically only have access to discriminative predictors rather than calibrated generative models. We introduce Fusion under INdependent Conditional Hypotheses (FINCH), an adaptive log-linear evidence fusion framework that integrates a pre-trained audio classifier with a structured spatiotemporal predictor. FINCH learns a per-sample gating function that estimates the reliability of contextual information from uncertainty and informativeness statistics. The resulting fusion family contains the audio-only classifier as a special case and explicitly bounds the influence of contextual evidence, yielding a risk-contained hypothesis class with an interpretable audio-only fallback. Across benchmarks, FINCH consistently outperforms fixed-weight fusion and audio-only baselines, improving robustness and error trade-offs even when contextual information is weak in isolation. We achieve state-of-the-art performance on CBI and competitive or improved performance on several subsets of BirdSet using a lightweight, interpretable, evidence-based approach. Code is available: \href{https://anonymous.4open.science/r/birdnoise-85CD/README.md{anonymous-repository}}

AnimalClue: Recognizing Animals by their Traces

Wildlife observation plays an important role in biodiversity conservation, necessitating robust methodologies for monitoring wildlife populations and interspecies interactions. Recent advances in computer vision have significantly contributed to automating fundamental wildlife observation tasks, such as animal detection and species identification. However, accurately identifying species from indirect evidence like footprints and feces remains relatively underexplored, despite its importance in contributing to wildlife monitoring. To bridge this gap, we introduce AnimalClue, the first large-scale dataset for species identification from images of indirect evidence. Our dataset consists of 159,605 bounding boxes encompassing five categories of indirect clues: footprints, feces, eggs, bones, and feathers. It covers 968 species, 200 families, and 65 orders. Each image is annotated with species-level labels, bounding boxes or segmentation masks, and fine-grained trait information, including activity patterns and habitat preferences. Unlike existing datasets primarily focused on direct visual features (e.g., animal appearances), AnimalClue presents unique challenges for classification, detection, and instance segmentation tasks due to the need for recognizing more detailed and subtle visual features. In our experiments, we extensively evaluate representative vision models and identify key challenges in animal identification from their traces. Our dataset and code are available at https://dahlian00.github.io/AnimalCluePage/

  • 5 authors
·
Jul 27, 2025 2

Multispecies Animal Re-ID Using a Large Community-Curated Dataset

Recent work has established the ecological importance of developing algorithms for identifying animals individually from images. Typically, a separate algorithm is trained for each species, a natural step but one that creates significant barriers to wide-spread use: (1) each effort is expensive, requiring data collection, data curation, and model training, deployment, and maintenance, (2) there is little training data for many species, and (3) commonalities in appearance across species are not exploited. We propose an alternative approach focused on training multi-species individual identification (re-id) models. We construct a dataset that includes 49 species, 37K individual animals, and 225K images, using this data to train a single embedding network for all species. Our model employs an EfficientNetV2 backbone and a sub-center ArcFace loss function with dynamic margins. We evaluate the performance of this multispecies model in several ways. Most notably, we demonstrate that it consistently outperforms models trained separately on each species, achieving an average gain of 12.5% in top-1 accuracy. Furthermore, the model demonstrates strong zero-shot performance and fine-tuning capabilities for new species with limited training data, enabling effective curation of new species through both incremental addition of data to the training set and fine-tuning without the original data. Additionally, our model surpasses the recent MegaDescriptor on unseen species, averaging an 19.2% top-1 improvement per species and showing gains across all 33 species tested. The fully-featured code repository is publicly available on GitHub, and the feature extractor model can be accessed on HuggingFace for seamless integration with wildlife re-identification pipelines. The model is already in production use for 60+ species in a large-scale wildlife monitoring system.

  • 5 authors
·
Dec 6, 2024

Removing Human Bottlenecks in Bird Classification Using Camera Trap Images and Deep Learning

Birds are important indicators for monitoring both biodiversity and habitat health; they also play a crucial role in ecosystem management. Decline in bird populations can result in reduced eco-system services, including seed dispersal, pollination and pest control. Accurate and long-term monitoring of birds to identify species of concern while measuring the success of conservation interventions is essential for ecologists. However, monitoring is time consuming, costly and often difficult to manage over long durations and at meaningfully large spatial scales. Technology such as camera traps, acoustic monitors and drones provide methods for non-invasive monitoring. There are two main problems with using camera traps for monitoring: a) cameras generate many images, making it difficult to process and analyse the data in a timely manner; and b) the high proportion of false positives hinders the processing and analysis for reporting. In this paper, we outline an approach for overcoming these issues by utilising deep learning for real-time classi-fication of bird species and automated removal of false positives in camera trap data. Images are classified in real-time using a Faster-RCNN architecture. Images are transmitted over 3/4G cam-eras and processed using Graphical Processing Units (GPUs) to provide conservationists with key detection metrics therefore removing the requirement for manual observations. Our models achieved an average sensitivity of 88.79%, a specificity of 98.16% and accuracy of 96.71%. This demonstrates the effectiveness of using deep learning for automatic bird monitoring.

  • 10 authors
·
May 3, 2023

BIRDNet: Mining and Encoding Boolean Implication Knowledge Graphs as Interpretable Deep Neural Networks

Tabular data in knowledge-rich domains often carries a latent prior in the form of Boolean implication relationships (BIRs) between pairs of features. We mine such relationships with a sparse-exception binomial test. The mined implications form a typed directed graph, equivalent to a propositional rule base of 2-literal clauses. We encode this graph as the connectivity of a layered neural network, called BIRDNet, in which each hidden unit corresponds to one mined rule and binds only to its two features. We show two consequences of this design: First, the architecture is sparse by construction: at most 2/d of the weights in each BIR layer are active, where d is the input dimension. Second, the model is interpretable: every trained unit keeps a stable symbolic identity, so rules can be read off the network without surrogate models. Unlike most neurosymbolic models, BIRDNet does not consume an external rule base; its structural prior is mined from the data. We evaluate BIRDNet on six transcriptomic and proteomic benchmarks. Our results show that BIRDNet stays within 0.02 AUROC of the strongest dense baseline, at a small accuracy cost, while using up to 96times fewer active parameters than an architecture-matched dense MLP. First-layer rules recover known biological signatures across multiple cancer subtypes and tissue types, including canonical amplicons, lineage-defining co-expression modules, and immune-infiltration markers. Data and code are available at: https://github.com/MAHI-Group/BIRDNet.

  • 1 authors
·
May 27

Choosing an Appropriate Platform and Workflow for Processing Camera Trap Data using Artificial Intelligence

Camera traps have transformed how ecologists study wildlife species distributions, activity patterns, and interspecific interactions. Although camera traps provide a cost-effective method for monitoring species, the time required for data processing can limit survey efficiency. Thus, the potential of Artificial Intelligence (AI), specifically Deep Learning (DL), to process camera-trap data has gained considerable attention. Using DL for these applications involves training algorithms, such as Convolutional Neural Networks (CNNs), to automatically detect objects and classify species. To overcome technical challenges associated with training CNNs, several research communities have recently developed platforms that incorporate DL in easy-to-use interfaces. We review key characteristics of four AI-powered platforms -- Wildlife Insights (WI), MegaDetector (MD), Machine Learning for Wildlife Image Classification (MLWIC2), and Conservation AI -- including data management tools and AI features. We also provide R code in an open-source GitBook, to demonstrate how users can evaluate model performance, and incorporate AI output in semi-automated workflows. We found that species classifications from WI and MLWIC2 generally had low recall values (animals that were present in the images often were not classified to the correct species). Yet, the precision of WI and MLWIC2 classifications for some species was high (i.e., when classifications were made, they were generally accurate). MD, which classifies images using broader categories (e.g., "blank" or "animal"), also performed well. Thus, we conclude that, although species classifiers were not accurate enough to automate image processing, DL could be used to improve efficiencies by accepting classifications with high confidence values for certain species or by filtering images containing blanks.

  • 6 authors
·
Feb 4, 2022

SWE-SQL: Illuminating LLM Pathways to Solve User SQL Issues in Real-World Applications

Resolution of complex SQL issues persists as a significant bottleneck in real-world database applications. Current Large Language Models (LLMs), while adept at text-to-SQL translation, have not been rigorously evaluated on the more challenging task of debugging SQL issues. To address this gap, we introduce BIRD-CRITIC, a new SQL issue debugging benchmark comprising 530 PostgreSQL tasks (BIRD-CRITIC-PG) and 570 multi-dialect tasks (BIRD-CRITIC-Multi), distilled from authentic user issues and replayed within new environments to facilitate rigorous evaluation. Baseline evaluations underscore the task's complexity, with the leading reasoning model O3-Mini achieving only 38.87% success rate on BIRD-CRITIC-PG and 33.33% on BIRD-CRITIC-Multi. Meanwhile, advancing open-source models for database tasks is crucial for empowering local development while safeguarding data privacy. Therefore, we present Six-Gym (Sql-fIX-Gym), a training environment for elevating open-source model capabilities for SQL issue debugging. This environment leverages SQL-Rewind strategy, which automatically generates executable issue-solution datasets by reverse-engineering issues from verified SQLs. However, popular trajectory-based fine-tuning methods do not explore substantial supervisory signals. We further propose f-Plan Boosting, which extracts high-level debugging plans from SQL solutions, enabling teacher LLMs to produce 73.7% more successful trajectories for training. We integrate these components into an open-source agent, Bird-Fixer. Based on Qwen-2.5-Coder-14B, Bird-Fixer achieves 38.11% success rate on BIRD-CRITIC-PG and 29.65% on BIRD-CRITIC-Multi, surpassing leading proprietary models such as Claude-3.7-Sonnet and GPT-4.1, marking a significant step toward democratizing sophisticated SQL-debugging capabilities. The leaderboard and source code are available: https://bird-critic.github.io/

  • 20 authors
·
Jun 23, 2025 1

RAP-Gen: Retrieval-Augmented Patch Generation with CodeT5 for Automatic Program Repair

Automatic program repair (APR) is crucial to reduce manual debugging efforts for developers and improve software reliability. While conventional search-based techniques typically rely on heuristic rules or a redundancy assumption to mine fix patterns, recent years have witnessed the surge of deep learning (DL) based approaches to automate the program repair process in a data-driven manner. However, their performance is often limited by a fixed set of parameters to model the highly complex search space of APR. To ease such burden on the parametric models, in this work, we propose a novel Retrieval-Augmented Patch Generation framework (RAP-Gen) by explicitly leveraging relevant fix patterns retrieved from a codebase of previous bug-fix pairs. Specifically, we build a hybrid patch retriever to account for both lexical and semantic matching based on the raw source code in a language-agnostic manner, which does not rely on any code-specific features. In addition, we adapt a code-aware language model CodeT5 as our foundation model to facilitate both patch retrieval and generation tasks in a unified manner. We adopt a stage-wise approach where the patch retriever first retrieves a relevant external bug-fix pair to augment the buggy input for the CodeT5 patch generator, which synthesizes a ranked list of repair patch candidates. Notably, RAP-Gen is a generic APR framework that can flexibly integrate different patch retrievers and generators to repair various types of bugs. We thoroughly evaluate RAP-Gen on three benchmarks in two programming languages, including the TFix benchmark in JavaScript, and Code Refinement and Defects4J benchmarks in Java, where the bug localization information may or may not be provided. Experimental results show that RAP-Gen significantly outperforms previous state-of-the-art approaches on all benchmarks, e.g., repairing 15 more bugs on 818 Defects4J bugs.

  • 4 authors
·
Sep 12, 2023

FlockGPT: Guiding UAV Flocking with Linguistic Orchestration

This article presents the world's first rapid drone flocking control using natural language through generative AI. The described approach enables the intuitive orchestration of a flock of any size to achieve the desired geometry. The key feature of the method is the development of a new interface based on Large Language Models to communicate with the user and to generate the target geometry descriptions. Users can interactively modify or provide comments during the construction of the flock geometry model. By combining flocking technology and defining the target surface using a signed distance function, smooth and adaptive movement of the drone swarm between target states is achieved. Our user study on FlockGPT confirmed a high level of intuitive control over drone flocking by users. Subjects who had never previously controlled a swarm of drones were able to construct complex figures in just a few iterations and were able to accurately distinguish the formed swarm drone figures. The results revealed a high recognition rate for six different geometric patterns generated through the LLM-based interface and performed by a simulated drone flock (mean of 80% with a maximum of 93\% for cube and tetrahedron patterns). Users commented on low temporal demand (19.2 score in NASA-TLX), high performance (26 score in NASA-TLX), attractiveness (1.94 UEQ score), and hedonic quality (1.81 UEQ score) of the developed system. The FlockGPT demo code repository can be found at: coming soon

  • 7 authors
·
May 9, 2024

ReViSQL: Achieving Human-Level Text-to-SQL

Translating natural language to SQL (Text-to-SQL) is a critical challenge in both database research and data analytics applications. Recent efforts have focused on enhancing SQL reasoning by developing large language models and AI agents that decompose Text-to-SQL tasks into manually designed, step-by-step pipelines. However, despite these extensive architectural engineering efforts, a significant gap remains: even state-of-the-art (SOTA) AI agents have not yet achieved the human-level accuracy on the BIRD benchmark. In this paper, we show that closing this gap does not require further architectural complexity, but rather clean training data to improve SQL reasoning of the underlying models. We introduce ReViSQL, a streamlined framework that achieves human-level accuracy on BIRD for the first time. Instead of complex AI agents, ReViSQL leverages reinforcement learning with verifiable rewards (RLVR) on BIRD-Verified, a dataset we curated comprising 2.5k verified Text-to-SQL instances based on the BIRD Train set. To construct BIRD-Verified, we design a data correction and verification workflow involving SQL experts. We identified and corrected data errors in 61.1% of a subset of BIRD Train. By training on BIRD-Verified, we show that improving data quality alone boosts the single-generation accuracy by 8.2-13.9% under the same RLVR algorithm. To further enhance performance, ReViSQL performs inference-time scaling via execution-based reconciliation and majority voting. Empirically, we demonstrate the superiority of our framework with two model scales: ReViSQL-235B-A22B and ReViSQL-30B-A3B. On an expert-verified BIRD Mini-Dev set, ReViSQL-235B-A22B achieves 93.2% execution accuracy, exceeding the proxy human-level accuracy (92.96%) and outperforming the prior open-source SOTA method by 9.8%. Our lightweight ReViSQL-30B-A3B matches the prior SOTA at a 7.5times lower per-query cost.

  • 4 authors
·
Mar 29

Drone Detection using Deep Neural Networks Trained on Pure Synthetic Data

Drone detection has benefited from improvements in deep neural networks, but like many other applications, suffers from the availability of accurate data for training. Synthetic data provides a potential for low-cost data generation and has been shown to improve data availability and quality. However, models trained on synthetic datasets need to prove their ability to perform on real-world data, known as the problem of sim-to-real transferability. Here, we present a drone detection Faster-RCNN model trained on a purely synthetic dataset that transfers to real-world data. We found that it achieves an AP_50 of 97.0% when evaluated on the MAV-Vid - a real dataset of flying drones - compared with 97.8% for an equivalent model trained on real-world data. Our results show that using synthetic data for drone detection has the potential to reduce data collection costs and improve labelling quality. These findings could be a starting point for more elaborate synthetic drone datasets. For example, realistic recreations of specific scenarios could de-risk the dataset generation of safety-critical applications such as the detection of drones at airports. Further, synthetic data may enable reliable drone detection systems, which could benefit other areas, such as unmanned traffic management systems. The code is available https://github.com/mazqtpopx/cranfield-synthetic-drone-detection alongside the datasets https://huggingface.co/datasets/mazqtpopx/cranfield-synthetic-drone-detection.

  • 5 authors
·
Nov 12, 2024